openvariant.find_files package#
Submodules#
openvariant.find_files.find_files module#
- openvariant.find_files.findfiles(base_path: str, annotation_path: Optional[str] = None, skip_files: bool = False) Generator[str, openvariant.annotation.annotation.Annotation, None][source]
Get each file and its proper annotation object.
- Parameters
base_path (srt) – Base path of input folder/file.
annotation_path (str or None) – Path of annotation file.
skip_files (bool) – Skip unreadable files and directories.
- Yields
str – Input file’s name.
Annotation – The proper schema of each input file.